Research

The main goal of the lab is to understand at a cellular and tissue levels what are the mechanisms that shape the development and function of the spinal cord and associated motor system, and understand how these mechanisms might go awry during disease. In particular, the lab focuses on studying cell-cell interactions in this context and uses human stem cell models as well as primary tissue validation.

Our research questions

  • HOW DO CELL-TO-CELL INTERACTIONS REGULATE THE DEVELOPMENT AND FUNCTION OF THE HUMAN SPINAL CORD AND MOTOR SYSTEM?

    Function in the CNS depends not only on the correct generation of a variety of cell types during development, but also on the tight regulation of interactions between these cell types. Human induced pluripotent stem cell (hiPSC)-derived cellular models allow us, in an unprecedented way, the opportunity to not only generate a diversity of human cell types in vitro, but to also study how these interact both within and across CNS regions in a controlled manner. In the lab we are interested in neuron-glia interactions within the spinal cord, and interactions between cortical motor neurons and spinal neuronal networks.

  • HOW DO ABERRATIONS IN CELL-TO-CELL INTERACTIONS CONTRIBUTE TO DISEASE?

    Aberrations in cell-to-cell interactions within the spinal cord and motor system are likely to lead to disease. One such example, where susceptibility to disease is thought to be mediated in part through interaction of motor neurons with other cell types, is amyotrophic lateral sclerosis (ALS). In the lab we are particularly interested in studying 1) cortical hyperexcitability and glutamate excitotoxicity and 2) astrocyte dysfunction or toxicity in the context of motor neuron death in ALS and other motor neuron disorders within the ALS spectrum.

Our approaches

  • HUMAN STEM CELL MODELS

    One of the backbones of our work is the use of hiPSC-derived models including 2D cultures, region-specific organoids or spheroids and physiologically-relevant organoid fusions we call assembloids (see image below of a cortico-motor assembloid). Human stem cell models are versatile and give us the opportunity to use patient-derived cells, or use genome engineering to study mutations of interest.

  • FUNCTIONAL IMAGING

    We also use a variety of functional imaging assays as readouts of connectivity and function. For example, we have implemented optogenetic techniques and the imaging of muscle contractions as well as calcium dynamics in assembloids, and we do this in combination with viral reporters and viral tracing techniques. See an example of optical stimulation of cortical spheroids coupled with muscle contraction in cortico-motor assembloids below.

    Importantly, we continue to innovate and implement novel tools to study connectivity and neuronal function in our models.

  • SINGLE CELL TRANSCRIPTOMICS

    Single cell transcriptomics, in combination with efforts to profile human primary tissues, has provided an unprecedented opportunity to interrogate the reproducibility and fidelity of human stem cell models and to gain novel insights into cellular and molecular phenotypes. In the lab we make use of some of these rapidly-evolving technologies, including single cell transcriptomics, spatial transcriptomics and single cell chromatin accessibility.

The Brain Organoid huB

The Andersen, Birey and Sloan labs are part of a tri-lab stem cell-based modeling effort at the Department of Human Genetics at Emory. Our labs work closely and synergistically on questions related to understanding the processes underlying the assembly of the central nervous system in health and disease. To accomplish these goals, we use a variety of human stem cell models including region-specific organoids and assembloids, along with state-of-the-art technologies including single cell genomics, live-imaging, genomic engineering, and new molecular tools.

Combining our collective expertise in the field, our three groups have together created the “Brain Organoid huB” where we aim to standardize, automate and innovate the maintenance, differentiation, and use of hiPSCs, organoids and assembloids. hiPSC and organoid maintenance is time consuming, and reproducibility and reliability of the cultures is key for experiment success. For this reason, one of the primary goals of the hub is to deprioritize time spent by lab members on media changes and quality control so that they can better focus on running assays, designing experiments, reading and thinking. At the same time, the hub provides a unique opportunity to improve upon standards and practices of differentiation protocols, reduce handling variability and increase throughput.

A new approach to data sharing
The brain organoid field is evolving quickly, yet there are many straightforward and easily testable questions that remain about optimization and best practices. The Hub has now set out to fill this gap by 1) performing tests to compare, optimize, and improve protocols related to brain organoid formation, culture, and patterning, and 2) posting the findings on the Hub Blog to be easily accessed by the larger community.

Visit brainorganoidhub.com for more info.